PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g031370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 204aa    MW: 22839.3 Da    PI: 10.1012
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g031370.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-133783354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      ++h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av YI++L
  Sopen08g031370.1 37 KNHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLADAVTYINEL 83
                      589************************6.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-172591IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.9333483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-133788No hitNo description
PfamPF000103.3E-113783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-173892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-164089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MDTKTIIMGS DSGNSDESSA MNEDSPKKRA RKSTTAKNHV EAERQRREKL NHRFYALRSV  60
VPNVSKMDKA SLLADAVTYI NELKAKVEEF KAVSSKKIIQ KRNSVSSSAV VDGTNANINM  120
FAYGMEVEVK IIGVEAMIRV RSPNVNYPCA RLMNVLRELE FQIHHATVSS MKEMMQQDVV  180
VRVPHNVTNE EAIKSVILTK LSLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084432.11e-145PREDICTED: transcription factor bHLH14-like
SwissprotQ392041e-47MYC2_ARATH; Transcription factor MYC2
TrEMBLK4CPW21e-132K4CPW2_SOLLC; Uncharacterized protein
STRINGSolyc08g083170.1.11e-131(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.17e-49bHLH family protein